The format remained largely the same as that used in 2001, though with one significant change. Each team played the opposition sides once, not twice, within their own division though with the same points format as in 2001. Following the first stage, the top two teams in each division would form a new Upper Section division, with the remaining seven teams forming the Lower Section. The teams in the Upper Section would play each other twice, those in the Lower Section just once.
NTV Beleza retained the title, again finishing just ahead of Tasaki Perule FC, with whom they drew on the final day to secure their seventh championship.
First Stage - East Japan
Final Standings and Results
| Played | Won | Drawn | Lost | GF | GA | +/- | Points | ||
| 1 | NTV Beleza | 5 | 5 | 0 | 0 | 28 | 2 | 26 | 15 |
| 2 | Saitama Reinas | 5 | 3 | 1 | 1 | 17 | 5 | 12 | 10 |
| 3 | YKK Tohoku LSC Flappers | 5 | 3 | 1 | 1 | 16 | 6 | 10 | 10 |
| 4 | AS Elfen Sayama FC | 5 | 1 | 1 | 3 | 7 | 16 | -9 | 4 |
| 5 | JEF United Ichihara Ladies | 5 | 1 | 1 | 3 | 7 | 20 | -13 | 4 |
| 6 | Shimizu Daihachi SC | 5 | 0 | 0 | 5 | 3 | 29 | -26 | 0 |
First Round, games played July 7th
YKK Tohoku Flappers 2 - 2 Saitama Reinas
Shimizu Daihachi S. C. 1 - 5 AS Elfen Sayama FC
JEF United Ichihara Ladies 0 - 6 NTV Beleza
Second Round, games played July 14th
AS Elfen Sayama FC 0 - 3 Saitama Reinas
NTV Beleza 9 - 0 Shimizu Daihachi S. C.
JEF United Ichihara Ladies 1 - 5 YKK Tohoku Flappers
Third Round, games played July 21st
YKK Tohoku Flappers 6 - 0 Shimizu Daihachi S. C.
AS Elfen Sayama FC 0 - 7 NTV Beleza
Saitama Reinas 5 - 0 JEF United Ichihara Ladies
Fourth Round, games played July 28th
Shimizu Daihachi S. C. 2 - 4 JEF United Ichihara Ladies
YKK Tohoku Flappers 3 - 0 AS Elfen Sayama FC
Saitama Reinas 2 - 3 NTV Beleza
Fifth Round, games played August 4th
AS Elfen Sayama FC 2 - 2 JEF United Ichihara Ladies
NTV Beleza 3 - 0 YKK Tohoku Flappers
Shimizu Daihachi S. C. 0 - 5 Saitama Reinas
First Stage - West Japan
Final Standings and Results
| Played | Won | Drawn | Lost | GF | GA | +/- | Points | ||
| 1 | Tasaki Perule FC | 4 | 4 | 0 | 0 | 14 | 1 | 13 | 12 |
| 2 | Iga FC Kunoichi | 4 | 3 | 0 | 1 | 10 | 3 | 7 | 9 |
| 3 | Takarazuka Bunnys Ladies | 4 | 1 | 1 | 2 | 3 | 5 | -2 | 4 |
| 4 | Speranza FC Takatsuki | 4 | 1 | 1 | 2 | 7 | 12 | -5 | 4 |
| 5 | Renaissance Kumamoto FC | 4 | 0 | 0 | 4 | 3 | 16 | -13 | 0 |
First Round, games played July 7th
Speranza FC Takatsuki 1 - 6 Tasaki Perule FC
Iga FC Kunoichi 2 - 0 Takarazuka Bunnys Ladies
Second Round, games played July 13th and 14th
Speranza FC Takatsuki 0 - 4 Iga FC Kunoichi
Tasaki Perule FC 5 - 0 Renaissance Kumamoto S.C.
Third Round, games played July 21st
Iga FC Kunoichi 4 - 1 Renaissance Kumamoto S.C.
Takarazuka Bunnys Ladies 1 - 1 Speranza FC Takatsuki
Fourth Round, games played July 28th
Renaissance Kumamoto S.C. 1 - 5 Speranza FC Takatsuki
Takarazuka Bunnys Ladies 0 - 1 Tasaki Perule FC
Fifth Round, games played August 4th
Tasaki Perule FC 2 - 0 Iga FC Kunoichi
Renaissance Kumamoto S.C. 1 - 2 Takarazuka Bunnys Ladies
Second Stage - Upper Section
Final Standings and Results
| Played | Won | Drawn | Lost | GF | GA | +/- | Points | ||
| 1 | NTV Beleza | 6 | 4 | 2 | 0 | 6 | 2 | 4 | 14 |
| 2 | Tasaki Perule FC | 6 | 4 | 1 | 1 | 11 | 4 | 7 | 13 |
| 3 | Saitama Reinas | 6 | 1 | 1 | 4 | 3 | 8 | -5 | 4 |
| 4 | Iga FC Kunoichi | 6 | 1 | 0 | 5 | 2 | 8 | -6 | 3 |
First Round, games played October 27th
Iga FC Kunoichi 0 - 1 NTV Beleza
Tasaki Perule FC 2 - 1 Saitama Reinas
Second Round, games played November 3rd
Tasaki Perule FC 2 - 0 Iga FC Kunoichi
Saitama Reinas 0 - 0 NTV Beleza Saitama Reinas
Third Round, games played November 10th
Iga FC Kunoichi 2 - 1 Saitama Reinas
Tasaki Perule FC 1 - 2 NTV Beleza
Fourth Round, games played November 17th
Saitama Reinas 0 - 3 Tasaki Perule FC
NTV Beleza 1 - 0 Iga FC Kunoichi
Fifth Round, games played November 24th
Iga FC Kunoichi 0 - 2 Tasaki Perule FC
NTV Beleza 1 - 0 Saitama Reinas
Sixth Round, games played November 30th
Saitama Reinas 1 - 0 Iga FC Kunoichi
NTV Beleza 1 - 1 Tasaki Perule FC
Second Stage - Lower Section
Final Standings and Results
| Played | Won | Drawn | Lost | GF | GA | +/- | Points | ||
| 5 | Takarazuka Bunnys Ladies | 6 | 5 | 0 | 1 | 18 | 7 | 11 | 15 |
| 6 | Speranza FC Takatsuki | 6 | 4 | 2 | 0 | 15 | 5 | 10 | 14 |
| 7 | YKK Tohoku LSC Flappers | 6 | 3 | 2 | 1 | 19 | 4 | 15 | 11 |
| 8 | AS Elfen Sayama FC | 6 | 2 | 1 | 3 | 14 | 12 | 2 | 7 |
| 9 | JEF United Ichihara Ladies | 6 | 0 | 4 | 2 | 9 | 18 | -9 | 4 |
| 10 | Shimizu Daihachi SC | 6 | 1 | 1 | 4 | 10 | 26 | -16 | 4 |
| 11 | Renaissance Kumamoto FC | 6 | 0 | 2 | 4 | 4 | 17 | -13 | 2 |
First Round, games played October 27th
YKK Tohoku Flappers 1 - 1 Renaissance Kumamoto S.C.
Takarazuka Bunnys Ladies 5 - 3 JEF United Ichihara Ladies
AS Elfen Sayama FC 2 - 4 Speranza FC Takatsuki
Second Round, games played November 2nd
Renaissance Kumamoto S.C. 0 - 3 Takarazuka Bunnys Ladies
Shimizu Daihachi S. C. 1 - 9 YKK Tohoku Flappers
JEF United Ichihara Ladies 0 - 3 AS Elfen Sayama FC
Third Round, games played November 4th
Takarazuka Bunnys Ladies 5 - 0 Shimizu Daihachi S. C.
Speranza FC Takatsuki 0 - 0 JEF United Ichihara Ladies
AS Elfen Sayama FC 5 - 0 Renaissance Kumamoto S.C.
Fourth Round, games played November 10th
JEF United Ichihara Ladies 0 - 7 YKK Tohoku Flappers
Speranza FC Takatsuki 2 - 1 Takarazuka Bunnys Ladies
Renaissance Kumamoto S.C. 1 - 2 Shimizu Daihachi S. C.
Fifth Round, games played November 17th
YKK Tohoku Flappers 0 - 0 Speranza FC Takatsuki
Shimizu Daihachi S. C. 4 - 4 JEF United Ichihara Ladies
Takarazuka Bunnys Ladies 3 - 2 AS Elfen Sayama FC
Sixth Round, games played November 24th
AS Elfen Sayama FC 1 - 2 YKK Tohoku Flappers
JEF United Ichihara Ladies 1 - 1 Renaissance Kumamoto S.C.
Speranza FC Takatsuki 4 - 1 Shimizu Daihachi S. C.
Seventh Round, games played December 1st
YKK Tohoku Flappers 0 - 1 Takarazuka Bunnys Ladies
Shimizu Daihachi S. C. 2 - 3 AS Elfen Sayama FC
Renaissance Kumamoto S.C. 1 - 5 Speranza FC Takatsuki
